V9XIM2 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	RNA methyltransferase
Main knot	3₁ (91%)
Global pLDDT	88.39
Species	Rhodococcus pyridinivorans
UniProt	V9XIM2
Structure Prediction Model	AlphaFold v4: V9XIM2
PDB structures	-
Model length	228
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.2	151-194	44	1-150, 195-228	150	34

Model Sequence

MTDTHSEPAVENVAGPTEWGEHPHGVGPWIEEFGTEPPTDPRYDPELLAHGDRRNVVDAYRYWTREAIVADIDRRRHPLHVAIENFAHDANIGTVVRTANAFAVGTVHIVGRRRWNRRGAMVTDRYQHLLHHSDVDALVAWAAEQDLEIVAVDNTPGSVRLETATLPRRCLLLFGQEGPGVTEAARNVASMTVSIAQFGSTRSINAGVAAGIAMHAWIRQHADFSDAW

Comments

ESM1

Categories voted by users:

Information

Protein name	RNA methyltransferase
Main knot	3₁ (88%)
Global pLDDT	84.14
Species	Rhodococcus pyridinivorans
UniProt	V9XIM2
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	228
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					34.7	151-194	44	1-150, 195-228	150	34

Model Sequence

Comments

Domain	Bacteria
Family	Nocardiaceae
Species (Full Name)	Rhodococcus pyridinivorans SB3094
Gene	Y013_10615 Y013_14735
PFAM codes	PF00588
InterPro codes	IPR001537, IPR029026, IPR029028
PDB structures (whole Protein)	-

V9XIM2F1

AF4

Model Sequence

ESM1

Model Sequence