W5N4C3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (79%)
Global pLDDT	96.42
Species	Spotted gar
UniProt	W5N4C3
Structure Prediction Model	AlphaFold v4: W5N4C3
PDB structures	-
Model length	395
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.5	29-290	262	1-28, 291-395	28	105

Model Sequence

MNGPADGLFDSLHEDGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPDAKVACETVCKTGMVLLCGEITSRAVVDYQKVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIILAHKLNARMAELRRNGAVPWLRPDSKTQVTVHYVQEKGAVIPVRVHTVVISVQHDDGVTLEDMQQVLKEKVIKAVVPAKYLDDKTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAELCRRVLVQVSYAIGVARPLSISLFTYGSSERTEKELLEIVDKNFDLRPGVIVRDLDLKRPIYQKTACYGHFGRKEFPWEVPKALRF

Comments

ESM1

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (71%)
Global pLDDT	83.22
Species	Spotted gar
UniProt	W5N4C3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	395
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					73.0	26-286	261	1-25, 287-395	25	109

Model Sequence

Comments

Domain	Eukaryota
Family	Lepisosteidae
Species (Full Name)	Lepisosteus oculatus (Spotted gar)
PFAM codes	PF00438, PF02772, PF02773
InterPro codes	IPR002133, IPR022628, IPR022629, IPR022630, IPR022631, IPR022636
PDB structures (whole Protein)	-

W5N4C3F1

AF4

Model Sequence

ESM1

Model Sequence