| Protein name |
Pyridoxamine 5'-phosphate oxidase
|
| Main knot |
31 (63%)
|
| Global pLDDT |
93.34
|
| Species |
Komagataeibacter xylinus
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 W5Y8A6
|
| PDB structures |
-
|
| Model length |
180
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
95.0 | 1-169 | 169 | 170-180 | 0 | 11 |
|
Model Sequence |
MTVFAFRGIDRATVCARMGLGDTGTPQDDARPAPMAIASLPDGWTMVLCNDPAMAQAHEARLAAYSASATVVTCTVDERRYESAAGGYHDGAQVWSVTHHGQAAGPHDLTITGTPPAALHETIAAMDREETQSGYPPGMLDFYFDIPVELVFALTGFRYCEGGHVVFDVVREISGRNAGP
|
| Protein name |
Pyridoxamine 5'-phosphate oxidase
|
| Main knot |
31 (58%)
|
| Global pLDDT |
82.69
|
| Species |
Komagataeibacter xylinus
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
180
|
| ESM generation time |
2023-06-24: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
91.0 | 2-169 | 168 | 1-1, 170-180 | 1 | 11 |
|
Model Sequence |
MTVFAFRGIDRATVCARMGLGDTGTPQDDARPAPMAIASLPDGWTMVLCNDPAMAQAHEARLAAYSASATVVTCTVDERRYESAAGGYHDGAQVWSVTHHGQAAGPHDLTITGTPPAALHETIAAMDREETQSGYPPGMLDFYFDIPVELVFALTGFRYCEGGHVVFDVVREISGRNAGP
|
| Domain |
Bacteria
|
| Family |
Acetobacteraceae
|
| Species (Full Name) |
Komagataeibacter xylinus E25
|
| Gene |
H845_1513
|
| PDB structures (whole Protein) |
-
|
W5Y8A6