W7KXS9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (81%)
Global pLDDT	95.02
Species	Candidatus Aramenus
UniProt	W7KXS9
Structure Prediction Model	AlphaFold v4: W7KXS9
PDB structures	-
Structure in AlphaLasso	W7KXS9: L_+1N
Model length	223
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.7	151-197	47	1-150, 198-223	150	26

Model Sequence

MGNNLRVNVILLDSSLELVPREISNHPSVVKNAKKRGKKPTEVLLDISVHYFAMKNLKDREKRGRPDIVHSAMILFLTEPFVRGDLYIHTIDSKIIKVNREVRPPKNYNRFVSLMEQLLINGKVPPESQNPLMEVTDLTLSDLSKEYKLVLLSEDGTYVPPTKLCEEIDDKTLLGIGAFPHGKFSREVLELFKESYSISSVPLETNQVLCRILSSCNEKLGWP

Comments

ESM1

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (80%)
Global pLDDT	93.74
Species	Candidatus Aramenus
UniProt	W7KXS9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	W7KXS9: L_+1N
Model length	223
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.3	151-197	47	1-150, 198-223	150	26

Model Sequence

Comments

Domain	Archaea
Family	Sulfolobaceae
Species (Full Name)	Candidatus Aramenus sulfurataquae
Gene	nep1 ASUL_03384
PFAM codes	PF03587
InterPro codes	IPR005304, IPR023503, IPR029026, IPR029028
PDB structures (whole Protein)	-

W7KXS9F1

AF4

Model Sequence

ESM1

Model Sequence