P0A8I8F1

Ribosomal RNA large subunit methyltransferase H
AF4
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Information
Protein name
Ribosomal RNA large subunit methyltransferase H
Main knot
31 (72%)
Global pLDDT
96.85
Species
Ecoli
UniProt
Structure Prediction Model
AlphaFold v4:  P0A8I8
PDB structures
Structures in KnotProt
Model length
155
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.6 71-120 50 1-70, 121-155 70 35
Model Sequence
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ribosomal RNA large subunit methyltransferase H
Main knot
31 (77%)
Knot fingerprint
K 31
Global pLDDT
96.85
Species
Ecoli
UniProt
Structure Prediction Model
AlphaFold v1:  P0A8I8
PDB structures
Structures in KnotProt
Model length
155
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.7 71-118 48 1-70, 119-155 70 37
Model Sequence
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE
Comments
ESM1
Categories voted by users:
Information
Protein name
Ribosomal RNA large subunit methyltransferase H
Main knot
31 (70%)
Global pLDDT
85.1
Species
Ecoli
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
155
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
81.4 71-120 50 1-70, 121-155 70 35
Model Sequence
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE
Comments
Domain Bacteria
Family Enterobacteriaceae
Species (Full Name) Escherichia coli
PFAM codes  PF02590
InterPro codes  IPR003742,  IPR029026,  IPR029028
PDB structures (whole Protein)  1NS5 A/B: 1-155  5TWJ A/B/C/D: 2-155  5TWK A/B/C/D: 2-155  5ZYO A/B/C/D: 1-155  7CEM A/B: 1-155  7CF7 A/B: 1-155  7CFY A/B/C/D: 1-155
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similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
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similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
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