Q9WUP7F1

Ubiquitin carboxyl-terminal hydrolase isozyme L5
AF4
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase isozyme L5
Main knot
52 (75%)
Global pLDDT
90.45
Species
Mouse
UniProt
Structure Prediction Model
AlphaFold v4:  Q9WUP7
PDB structures
Structures in KnotProt
Model length
329
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Knot map - computed using the Web Server in job: 4e87cffb6fe52

Knot cutoff: 48%

2025-01-02T13:33:46.243709 image/svg+xml Matplotlib v3.6.1, https://matplotlib.org/

Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
91.3 12-222 211 1-11, 223-329 Knot
90.3 31-163 133 1-30, 164-329 224-329 164-223 Slipknot
Model Sequence
MSSNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSTVLSAIQSEVARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
Knot Pull simplified model computed using the Web Server in job: 4e87cffb6fe52
Parsing response... [2097152/3801002]
Loading ...
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase isozyme L5
Main knot
52 (71%)
Knot fingerprint
K 52 31 31
Global pLDDT
90.45
Species
Mouse
UniProt
Structure Prediction Model
AlphaFold v1:  Q9WUP7
PDB structures
Structures in KnotProt
Model length
329
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%

2021-12-22T02:32:02.194179 image/svg+xml Matplotlib v3.3.4, https://matplotlib.org/

Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
91.3 11-223 213 1-10, 224-329 Knot
90.3 9-166 158 1-8, 167-329 Slipknot
Model Sequence
MSSNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSTVLSAIQSEVARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
Comments
ESM1
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase isozyme L5
Main knot
52 (78%)
Global pLDDT
88.08
Species
Mouse
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
329
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
86.0 10-221 212 1-9, 222-329
Model Sequence
MSSNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSTVLSAIQSEVARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
Comments
Domain Eukaryota
Family Muridae
Species (Full Name) Mus musculus
PFAM codes  PF01088,  PF18031
InterPro codes  IPR001578,  IPR017390,  IPR033837,  IPR036959,  IPR038765,  IPR041507
PDB structures (whole Protein)  4WLQ A: 1-329  4WLR A: 1-329
...loading similar chains, please wait...
similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
...loading similar chains, please wait...
similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
#similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
        #similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in the pdb database (?% sequence similarity)
        ...loading similar chains, please wait...

Identical Structures in AlphaKnot - computed using the Web Server in job: 4e87cffb6fe52
How to cite