P35127F1

Ubiquitin carboxyl-terminal hydrolase YUH1
AF4
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase YUH1
Main knot
52 (55%)
Global pLDDT
89.66
Species
Yeast
UniProt
Structure Prediction Model
AlphaFold v4:  P35127
PDB structures
Structures in KnotProt
Model length
236
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Knot map - computed using the Web Server in job: 6e1964870aa66c

Knot cutoff: 48%


Help Knotting data interpretation
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Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
None 7-234 228 1-6, 235-236 Knot
88.7 8-167 160 1-7, 168-236 229-236 168-228 Slipknot
Model Sequence
MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE
Knot Pull simplified model computed using the Web Server in job: 6e1964870aa66c
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase YUH1
Main knot
52 (56%)
Knot fingerprint
K 52 31 31
Global pLDDT
89.66
Species
Yeast
UniProt
Structure Prediction Model
AlphaFold v1:  P35127
PDB structures
Structures in KnotProt
Model length
236
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2022-01-13
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
90.4 7-232 226 1-6, 233-236 Knot
89.3 8-168 161 1-7, 169-236 Slipknot
Model Sequence
MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE
Comments
ESM1
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase YUH1
Main knot
52 (55%)
Global pLDDT
86.04
Species
Yeast
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
236
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
86.0 12-230 219 1-11, 231-236
Model Sequence
MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE
Comments
Domain Eukaryota
Family Saccharomycetaceae
Species (Full Name) Saccharomyces cerevisiae
PFAM codes  PF01088
InterPro codes  IPR001578,  IPR036959,  IPR038765
PDB structures (whole Protein)  1CMX A/C: 1-235  7EN4 A: 1-236
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similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
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similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
#similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
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#similar chains, but unknotted
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        #similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in the pdb database (?% sequence similarity)
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Identical Structures in AlphaKnot - computed using the Web Server in job: 6e1964870aa66c
Structure ID Identity Length AF4 Model Topology ESM Model Topology Organism Link
A0A0L8VN61
95.6 %
236
52 (52%)
52 (53%)
nom. inval.
B5VLP6
95.6 %
236
52 (54%)
52 (53%)
strain AWRI1631
B3LQI4
95.6 %
236
52 (53%)
52 (56%)
strain RM11-1a
H0GIU7
95.6 %
236
52 (58%)
52 (48%)
strain VIN7
C8ZBP6
95.6 %
236
52 (52%)
52 (53%)
Baker's yeast
C7GMA8
95.6 %
236
52 (56%)
52 (52%)
strain JAY291
P35127
95.6 %
236
52 (55%)
52 (55%)
Yeast
A6ZQ55
95.5 %
236
52 (55%)
52 (53%)
strain YJM789
A0A6C1EAX6
95.3 %
236
52 (57%)
52 (48%)
Lager yeast
G2WHA2
95.3 %
236
52 (58%)
52 (53%)
Baker's yeast
N1P3L2
95.2 %
236
52 (55%)
52 (53%)
strain CEN.PK113-7D
H0GX40
78.5 %
237
52 (56%)
52 (55%)
strain VIN7
J8PLW6
76.8 %
238
52 (60%)
52 (55%)
Yeast
A0A6C1DU17
75.7 %
238
52 (59%)
52 (59%)
Lager yeast
A0A0L8RGY1
75.4 %
238
52 (57%)
52 (56%)
Yeast
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