P35127F1

Ubiquitin carboxyl-terminal hydrolase YUH1
AF4
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase YUH1
Main knot
52 (55%)
Global pLDDT
89.66
Species
Yeast
UniProt
Structure Prediction Model
AlphaFold v4:  P35127
PDB structures
Structures in KnotProt
Model length
236
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
90.3 12-230 219 1-11, 231-236
Model Sequence
MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase YUH1
Main knot
52 (56%)
Knot fingerprint
K 52 31 31
Global pLDDT
89.66
Species
Yeast
UniProt
Structure Prediction Model
AlphaFold v1:  P35127
PDB structures
Structures in KnotProt
Model length
236
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2022-01-13
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
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Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
90.4 7-232 226 1-6, 233-236 Knot
89.3 8-168 161 1-7, 169-236 Slipknot
Model Sequence
MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE
Comments
ESM1
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase YUH1
Main knot
52 (55%)
Global pLDDT
86.04
Species
Yeast
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
236
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
86.0 12-230 219 1-11, 231-236
Model Sequence
MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE
Comments
Domain Eukaryota
Family Saccharomycetaceae
Species (Full Name) Saccharomyces cerevisiae
PFAM codes  PF01088
InterPro codes  IPR001578,  IPR036959,  IPR038765
PDB structures (whole Protein)  1CMX A/C: 1-235  7EN4 A: 1-236
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similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
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