Status Status Details Main knot Main knot (knot pull) Project name Input data Model lengths Last status changed Job submitted Key What to compute? Closure Number of random closures Accuracy Trajectory (Knot Pull) Search Identical
FINISHED 2025-06-25 00:33:01: AF-A0A7Y3BHM1-F1 - main chain knotted: ... 51 (91%) 51(A)[6(+), 8(+), 10(+), 2(+), 4(+)](A) Recomputed from: A0A7Y3BHM1-F1-AFv4 AF-A0A7Y3BHM1-F1.cif
 2025-06-25 00:36:29 2025-06-25 00:32:37 b46c104ca87168 Full matrix always close by statistical methods 100 Detailed Yes Yes: Identity: 70%

Results for job AF-A0A7Y3BHM1-F1

Topology type: KNOTTED

Information
Main knot 51 (91%)
Knot fingerprint K 51 31
Global pLDDT 88.2

Artifact check
Topological complexity Knot with a low (5) number of crossings
pLDDT Knot-core Very high (98.1); 100.0% has >70 pLDDT; 0.0% has <50 pLDDT
pLDDT N-end knot-core border Very high (98.3); 100.0% has >70 pLDDT; 0.0% has <50 pLDDT
pLDDT C-end knot-core border Very high (98.0); 100.0% has >70 pLDDT; 0.0% has <50 pLDDT
C-alpha clashes No clashes
Knot map

Knot cutoff: 48 %


Knotting data interpretation
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Slipknot tails Slipknot loops Main knot
98.1 42-97 55 1-41, 98-108 41 11 Knot
98.1 53-86 33 1-52, 87-108 52 22 Knot
Model Sequence
MKILSIIILFILFTTSSFAQSEEGIDEEECSFNGIKLYGKIQFVESFPDITIKVVESFPDLEVKIVDSFADDCGEWQIVDSFPDIKIKIVESFPDLKIKFVESFPGIP
Knot Pull Trajectory
Identical Structures in AlphaKnot
Structure ID Identity Length AF4 Model Topology ESM Model Topology Organism Link
A0A7Y3BHM1
95.1 %
108
51 (91%)
01 (93%)
Ignavibacteriaceae bacterium
A0A660Z1L2
82.0 %
104
51 (92%)
01 (96%)
Ignavibacteriae bacterium
A0A7Y8J6Z9
77.1 %
114
51 (92%)
01 (91%)
Ignavibacteriaceae bacterium
A0A6G0AH96
80.9 %
103
51 (90%)
01 (90%)
Chlorobi bacterium
A0A7Y5FDH9
80.9 %
103
51 (90%)
01 (91%)
Ignavibacteriaceae bacterium
A0A6M8VIY0
80.9 %
103
51 (91%)
01 (88%)
Ignavibacteriae bacterium
A0A7Y2K635
80.4 %
113
51 (90%)
01 (95%)
Ignavibacteriaceae bacterium
A0A1G0SWK8
80.2 %
111
51 (92%)
01 (95%)
Ignavibacteria bacterium
A0A7Y8H520
78.1 %
116
51 (95%)
01 (96%)
Ignavibacteriaceae bacterium
A0A1V5TDQ0
73.4 %
121
51 (89%)
01 (95%)
Ignavibacteria bacterium ADurb
A0A6M8VEA3
72.2 %
119
51 (94%)
01 (95%)
Ignavibacteriae bacterium
A0A2H6EGT5
73.0 %
122
51 (94%)
01 (92%)
bacterium BMS3Abin03
A0A523NA91
81.8 %
85
51 (73%)
01 (84%)
Ignavibacteria bacterium
A0A497CWM3
77.6 %
92
51 (87%)
01 (85%)
Bacteroidetes bacterium
A0A2S7KAD5
71.1 %
108
51 (91%)
01 (97%)
Marinicaulis flavus
A0A7X7FV79
70.9 %
95
51 (91%)
01 (88%)
Bacteroidales bacterium
A0A7V1FUN2
71.4 %
96
51 (81%)
01 (92%)
Ignavibacteriales bacterium
A0A3M1XWA8
80.1 %
102
51 (90%)
01 (95%)
Bacteroidetes bacterium
A0A3C1W0V2
80.6 %
93
51 (87%)
01 (89%)
Succinivibrio sp
A0A3M1D4Y1
79.1 %
102
51 (89%)
01 (92%)
Deltaproteobacteria bacterium
A0A850GC46
75.2 %
95
51 (84%)
01 (93%)
Pseudenhygromyxa sp
A0A256WJ90
73.5 %
89
51 (78%)
01 (88%)
Bacteroidetes bacterium
A0A7G8ZLD3
78.0 %
93
51 (86%)
01 (89%)
Hyphobacterium sp
A0A2E1XDU6
70.8 %
97
51 (88%)
01 (95%)
Parvularcula sp
A0A7C2T7J6
77.4 %
97
51 (89%)
01 (92%)
Alphaproteobacteria bacterium
A0A2E5S1A5
75.7 %
97
51 (88%)
01 (93%)
Leptospiraceae bacterium
A0A850SM69
76.3 %
97
51 (91%)
01 (90%)
Parvularculaceae bacterium
A0A3D5X830
71.6 %
104
51 (92%)
52 (84%)
Bacteroidales bacterium
A6GFT1
72.8 %
130
51 (92%)
01 (95%)
Plesiocystis pacifica
A0A661NL32
74.9 %
106
51 (91%)
01 (93%)
Deltaproteobacteria bacterium
A0A7Y7TR99
75.7 %
122
51 (90%)
01 (96%)
Bacteroidetes bacterium
A0A2G2EQS1
77.2 %
84
51 (67%)
01 (88%)
Fluviicola sp
A0A2E9Q6U3
74.7 %
101
51 (87%)
01 (94%)
Spirochaetaceae bacterium
A0A4R9LN45
74.5 %
105
51 (88%)
01 (93%)
Leptospira ilyithenensis
A0A495DN37
73.5 %
99
51 (89%)
01 (87%)
Maricaulis maris
A0A352LL24
75.1 %
102
51 (89%)
01 (95%)
Sutterella sp
A0A2S9YWH1
73.5 %
141
51 (91%)
01 (96%)
Enhygromyxa salina
A0A524Q268
71.7 %
99
51 (92%)
01 (90%)
Chrysiogenales bacterium
A0A3B0SZW9
73.0 %
94
51 (84%)
72 (73%)
hydrothermal vent
A0A239PSS6
73.8 %
105
51 (92%)
01 (93%)
Amphiplicatus metriothermophilus
A0A662BNH4
73.6 %
84
51 (68%)
01 (79%)
Bacteroidetes bacterium
A0A2M7GTD8
73.4 %
93
51 (88%)
01 (85%)
Rhodobacterales bacterium
A0A2D8BSD1
73.8 %
96
51 (88%)
01 (89%)
Maricaulis sp
A0A3C2E7L5
73.8 %
96
51 (86%)
01 (89%)
Alphaproteobacteria bacterium
A0A3B9H776
72.6 %
94
51 (86%)
01 (90%)
Flavobacteriales bacterium
A0A2E0FK59
72.6 %
94
51 (85%)
01 (87%)
Crocinitomicaceae bacterium
A0A1F3A835
71.8 %
106
51 (86%)
01 (98%)
Alphaproteobacteria bacterium
A0A1G9QJN8
71.2 %
95
51 (86%)
52 (59%)
Maricaulis salignorans
A0A7V7MYV8
71.2 %
102
51 (93%)
01 (93%)
Proteobacteria bacterium
A0A2E4Y6V4
71.2 %
105
51 (88%)
01 (91%)
Halobacteriovoraceae bacterium
A0A210W7D7
70.4 %
107
51 (92%)
01 (91%)
Delftia sp
A0A543B7T5
70.4 %
107
51 (92%)
01 (93%)
Delftia sp
A0A2G6TUI3
70.4 %
107
51 (92%)
01 (92%)
Burkholderiales bacterium
A0A031I2T7
70.4 %
107
51 (93%)
01 (92%)
Delftia sp
A0A080NR20
70.4 %
107
51 (91%)
01 (92%)
Pseudomonas acidovorans
F6ALC5
70.4 %
127
51 (92%)
01 (92%)
strain Cs1-4
A0A7T2W087
70.4 %
127
51 (91%)
01 (91%)
Pseudomonas acidovorans
A0A1C7L4N4
70.4 %
127
51 (88%)
01 (92%)
Delftia sp
A9BLR2
70.4 %
127
51 (92%)
01 (92%)
Delftia acidovorans
A0A2G7SSX0
70.4 %
127
51 (93%)
01 (92%)
Chryseobacterium sp
A0A291JH11
70.4 %
127
51 (90%)
01 (94%)
Pseudomonas acidovorans
A0A0C2CRK6
71.2 %
140
51 (91%)
01 (95%)
Enhygromyxa salina
A0A316SKP8
73.9 %
80
51 (80%)
01 (87%)
Succinivibrio sp
A0A410G7H5
70.0 %
89
51 (87%)
01 (96%)
Aequorivita sp
A0A662BPU7
72.1 %
83
51 (71%)
01 (86%)
Bacteroidetes bacterium
A0A4V3JUX8
73.2 %
102
51 (91%)
01 (95%)
Leptospira stimsonii
N1WHV1
70.1 %
106
51 (93%)
01 (92%)
Leptospira weilii serovar Ranarum str
A0A2S9XPG2
70.9 %
144
51 (93%)
01 (92%)
Enhygromyxa salina
A1ZQH7
72.4 %
147
51 (92%)
01 (96%)
Microscilla marina
A0A1Q3GM39
71.6 %
84
51 (79%)
01 (82%)
marine bacterium
A0A396YW73
72.2 %
102
51 (92%)
01 (94%)
Leptospira stimsonii
A0A1D7UTG5
72.2 %
106
51 (93%)
01 (95%)
Leptospira tipperaryensis
A0A372DL17
71.1 %
119
51 (95%)
01 (93%)
Limnothrix sp
A0A1C0VDQ5
71.1 %
119
51 (91%)
01 (93%)
Limnothrix sp
A0A523G0G9
70.0 %
88
51 (80%)
01 (86%)
Alphaproteobacteria bacterium
A0A2N0BBR6
71.3 %
92
51 (89%)
01 (52%)
Leptospira ellisii
A0A5F2BS44
71.3 %
99
51 (92%)
01 (92%)
Leptospira yasudae
A0A5F1YI99
71.3 %
102
51 (93%)
01 (91%)
Leptospira gomenensis
A0A3D0QRW1
70.8 %
115
51 (92%)
01 (95%)
Flavobacteriales bacterium
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