A0A7Y3BHM1F1

TonB_C domain-containing protein
AF4
Categories voted by users:
Information
Protein name
TonB_C domain-containing protein
Main knot
51 (91%)
Global pLDDT
88.29
Species
Ignavibacteriaceae bacterium
UniProt
Structure Prediction Model
AlphaFold v4:  A0A7Y3BHM1
PDB structures
-
Structure in AlphaLasso
  A0A7Y3BHM1: LS2++C
Model length
108
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Knot map - computed using the Web Server in job: b46c104ca87168

Knot cutoff: 48%


Help Knotting data interpretation
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Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
98.1 42-97 56 1-41, 98-108 Knot
98.1 53-86 34 1-52, 87-108 Knot
Model Sequence
MKILSIIILFILFTTSSFAQSEEGIDEEECSFNGIKLYGKIQFVESFPDITIKVVESFPDLEVKIVDSFADDCGEWQIVDSFPDIKIKIVESFPDLKIKFVESFPGIP
Knot Pull simplified model computed using the Web Server in job: b46c104ca87168
Comments
ESM1
Categories voted by users:
Information
Protein name
TonB_C domain-containing protein
Main knot
01 (93%)
Species
Ignavibacteriaceae bacterium
UniProt
Structure Prediction Model
PDB structures
-
Structure in AlphaLasso
  A0A7Y3BHM1: LS2++C
Model length
108
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Model Sequence
MKILSIIILFILFTTSSFAQSEEGIDEEECSFNGIKLYGKIQFVESFPDITIKVVESFPDLEVKIVDSFADDCGEWQIVDSFPDIKIKIVESFPDLKIKFVESFPGIP
Comments
Domain Bacteria
Family Ignavibacteriaceae
Species (Full Name) Ignavibacteriaceae bacterium
Gene HKO83_02790 HKP17_13990
PDB structures (whole Protein) -

Identical Structures in AlphaKnot - computed using the Web Server in job: b46c104ca87168
Structure ID Identity Length AF4 Model Topology ESM Model Topology Organism Link
A0A7Y3BHM1
95.1 %
108
51 (91%)
01 (93%)
Ignavibacteriaceae bacterium
A0A660Z1L2
82.0 %
104
51 (92%)
01 (96%)
Ignavibacteriae bacterium
A0A7Y8J6Z9
77.1 %
114
51 (92%)
01 (91%)
Ignavibacteriaceae bacterium
A0A6G0AH96
80.9 %
103
51 (90%)
01 (90%)
Chlorobi bacterium
A0A7Y5FDH9
80.9 %
103
51 (90%)
01 (91%)
Ignavibacteriaceae bacterium
A0A6M8VIY0
80.9 %
103
51 (91%)
01 (88%)
Ignavibacteriae bacterium
A0A7Y2K635
80.4 %
113
51 (90%)
01 (95%)
Ignavibacteriaceae bacterium
A0A1G0SWK8
80.2 %
111
51 (92%)
01 (95%)
Ignavibacteria bacterium
A0A7Y8H520
78.1 %
116
51 (95%)
01 (96%)
Ignavibacteriaceae bacterium
A0A1V5TDQ0
73.4 %
121
51 (89%)
01 (95%)
Ignavibacteria bacterium ADurb
A0A6M8VEA3
72.2 %
119
51 (94%)
01 (95%)
Ignavibacteriae bacterium
A0A2H6EGT5
73.0 %
122
51 (94%)
01 (92%)
bacterium BMS3Abin03
A0A523NA91
81.8 %
85
51 (73%)
01 (84%)
Ignavibacteria bacterium
A0A497CWM3
77.6 %
92
51 (87%)
01 (85%)
Bacteroidetes bacterium
A0A2S7KAD5
71.1 %
108
51 (91%)
01 (97%)
Marinicaulis flavus
A0A7X7FV79
70.9 %
95
51 (91%)
01 (88%)
Bacteroidales bacterium
A0A7V1FUN2
71.4 %
96
51 (81%)
01 (92%)
Ignavibacteriales bacterium
A0A3M1XWA8
80.1 %
102
51 (90%)
01 (95%)
Bacteroidetes bacterium
A0A3C1W0V2
80.6 %
93
51 (87%)
01 (89%)
Succinivibrio sp
A0A3M1D4Y1
79.1 %
102
51 (89%)
01 (92%)
Deltaproteobacteria bacterium
A0A850GC46
75.2 %
95
51 (84%)
01 (93%)
Pseudenhygromyxa sp
A0A256WJ90
73.5 %
89
51 (78%)
01 (88%)
Bacteroidetes bacterium
A0A7G8ZLD3
78.0 %
93
51 (86%)
01 (89%)
Hyphobacterium sp
A0A2E1XDU6
70.8 %
97
51 (88%)
01 (95%)
Parvularcula sp
A0A7C2T7J6
77.4 %
97
51 (89%)
01 (92%)
Alphaproteobacteria bacterium
A0A2E5S1A5
75.7 %
97
51 (88%)
01 (93%)
Leptospiraceae bacterium
A0A850SM69
76.3 %
97
51 (91%)
01 (90%)
Parvularculaceae bacterium
A0A3D5X830
71.6 %
104
51 (92%)
52 (84%)
Bacteroidales bacterium
A6GFT1
72.8 %
130
51 (92%)
01 (95%)
Plesiocystis pacifica
A0A661NL32
74.9 %
106
51 (91%)
01 (93%)
Deltaproteobacteria bacterium
A0A7Y7TR99
75.7 %
122
51 (90%)
01 (96%)
Bacteroidetes bacterium
A0A2G2EQS1
77.2 %
84
51 (67%)
01 (88%)
Fluviicola sp
A0A2E9Q6U3
74.7 %
101
51 (87%)
01 (94%)
Spirochaetaceae bacterium
A0A4R9LN45
74.5 %
105
51 (88%)
01 (93%)
Leptospira ilyithenensis
A0A495DN37
73.5 %
99
51 (89%)
01 (87%)
Maricaulis maris
A0A352LL24
75.1 %
102
51 (89%)
01 (95%)
Sutterella sp
A0A2S9YWH1
73.5 %
141
51 (91%)
01 (96%)
Enhygromyxa salina
A0A524Q268
71.7 %
99
51 (92%)
01 (90%)
Chrysiogenales bacterium
A0A3B0SZW9
73.0 %
94
51 (84%)
72 (73%)
hydrothermal vent
A0A239PSS6
73.8 %
105
51 (92%)
01 (93%)
Amphiplicatus metriothermophilus
A0A662BNH4
73.6 %
84
51 (68%)
01 (79%)
Bacteroidetes bacterium
A0A2M7GTD8
73.4 %
93
51 (88%)
01 (85%)
Rhodobacterales bacterium
A0A2D8BSD1
73.8 %
96
51 (88%)
01 (89%)
Maricaulis sp
A0A3C2E7L5
73.8 %
96
51 (86%)
01 (89%)
Alphaproteobacteria bacterium
A0A3B9H776
72.6 %
94
51 (86%)
01 (90%)
Flavobacteriales bacterium
A0A2E0FK59
72.6 %
94
51 (85%)
01 (87%)
Crocinitomicaceae bacterium
A0A1F3A835
71.8 %
106
51 (86%)
01 (98%)
Alphaproteobacteria bacterium
A0A1G9QJN8
71.2 %
95
51 (86%)
52 (59%)
Maricaulis salignorans
A0A7V7MYV8
71.2 %
102
51 (93%)
01 (93%)
Proteobacteria bacterium
A0A2E4Y6V4
71.2 %
105
51 (88%)
01 (91%)
Halobacteriovoraceae bacterium
A0A210W7D7
70.4 %
107
51 (92%)
01 (91%)
Delftia sp
A0A543B7T5
70.4 %
107
51 (92%)
01 (93%)
Delftia sp
A0A2G6TUI3
70.4 %
107
51 (92%)
01 (92%)
Burkholderiales bacterium
A0A031I2T7
70.4 %
107
51 (93%)
01 (92%)
Delftia sp
A0A080NR20
70.4 %
107
51 (91%)
01 (92%)
Pseudomonas acidovorans
F6ALC5
70.4 %
127
51 (92%)
01 (92%)
strain Cs1-4
A0A7T2W087
70.4 %
127
51 (91%)
01 (91%)
Pseudomonas acidovorans
A0A1C7L4N4
70.4 %
127
51 (88%)
01 (92%)
Delftia sp
A9BLR2
70.4 %
127
51 (92%)
01 (92%)
Delftia acidovorans
A0A2G7SSX0
70.4 %
127
51 (93%)
01 (92%)
Chryseobacterium sp
A0A291JH11
70.4 %
127
51 (90%)
01 (94%)
Pseudomonas acidovorans
A0A0C2CRK6
71.2 %
140
51 (91%)
01 (95%)
Enhygromyxa salina
A0A316SKP8
73.9 %
80
51 (80%)
01 (87%)
Succinivibrio sp
A0A410G7H5
70.0 %
89
51 (87%)
01 (96%)
Aequorivita sp
A0A662BPU7
72.1 %
83
51 (71%)
01 (86%)
Bacteroidetes bacterium
A0A4V3JUX8
73.2 %
102
51 (91%)
01 (95%)
Leptospira stimsonii
N1WHV1
70.1 %
106
51 (93%)
01 (92%)
Leptospira weilii serovar Ranarum str
A0A2S9XPG2
70.9 %
144
51 (93%)
01 (92%)
Enhygromyxa salina
A1ZQH7
72.4 %
147
51 (92%)
01 (96%)
Microscilla marina
A0A1Q3GM39
71.6 %
84
51 (79%)
01 (82%)
marine bacterium
A0A396YW73
72.2 %
102
51 (92%)
01 (94%)
Leptospira stimsonii
A0A1D7UTG5
72.2 %
106
51 (93%)
01 (95%)
Leptospira tipperaryensis
A0A372DL17
71.1 %
119
51 (95%)
01 (93%)
Limnothrix sp
A0A1C0VDQ5
71.1 %
119
51 (91%)
01 (93%)
Limnothrix sp
A0A523G0G9
70.0 %
88
51 (80%)
01 (86%)
Alphaproteobacteria bacterium
A0A2N0BBR6
71.3 %
92
51 (89%)
01 (52%)
Leptospira ellisii
A0A5F2BS44
71.3 %
99
51 (92%)
01 (92%)
Leptospira yasudae
A0A5F1YI99
71.3 %
102
51 (93%)
01 (91%)
Leptospira gomenensis
A0A3D0QRW1
70.8 %
115
51 (92%)
01 (95%)
Flavobacteriales bacterium
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